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cellpin - Home cellpin - Home
  • API
    • cellpin.pp.setup_data
    • cellpin.pp.load_sc_example
    • cellpin.pp.load_sp_example
    • cellpin.tl.label_transfer
    • cellpin.pl.losses
    • cellpin.models.CellPin
    • cellpin.models.CellPin.fit
    • cellpin.models.CellPin.pretrain_model
    • cellpin.models.CellPin.train_model
    • cellpin.models.CellPin.impute
    • cellpin.models.CellPin.get_cell_embedding
    • cellpin.dataset.scAnnDataset
    • cellpin.dataset.stAnnDataset
  • Changelog
  • Contributing guide
  • Basic Usage Tutorial
  • Cellpin Label Transfer Tutorial

Index

C | E | F | G | I | L | M | O | P | S | T | V

C

  • CellPin (class in cellpin.models)
  • cellpin.dataset
    • module
  • cellpin.models
    • module
  • cellpin.pl
    • module
  • cellpin.pp
    • module
  • cellpin.tl
    • module
  • compute_losses() (cellpin.models.CellPin method), [1]
  • compute_pretrain_losses() (cellpin.models.CellPin method), [1]
  • configure_optimizers() (cellpin.models.CellPin method), [1]

E

  • embed_and_impute() (cellpin.models.CellPin method), [1]

F

  • fit() (cellpin.models.CellPin method), [1], [2]

G

  • get_cell_embedding() (cellpin.models.CellPin method), [1], [2]

I

  • impute() (cellpin.models.CellPin method), [1], [2]

L

  • label_transfer() (in module cellpin.tl)
  • load_sc_example() (in module cellpin.pp)
  • load_sp_example() (in module cellpin.pp)
  • losses() (in module cellpin.pl)

M

  • module
    • cellpin.dataset
    • cellpin.models
    • cellpin.pl
    • cellpin.pp
    • cellpin.tl

O

  • on_train_epoch_start() (cellpin.models.CellPin method), [1]

P

  • pretrain_model() (cellpin.models.CellPin method), [1], [2]

S

  • save() (cellpin.models.CellPin method), [1]
  • scAnnDataset (class in cellpin.dataset)
  • set_stage_loss_weights() (cellpin.models.CellPin method), [1]
  • setup_data() (in module cellpin.pp)
  • stAnnDataset (class in cellpin.dataset)

T

  • train_model() (cellpin.models.CellPin method), [1], [2]
  • training (cellpin.models.CellPin attribute)
  • training_step() (cellpin.models.CellPin method), [1]

V

  • validation_step() (cellpin.models.CellPin method), [1]

By Philipp Putze, Daniele Lucarelli

© Copyright 2026, Philipp Putze, Daniele Lucarelli..