cellpin.models.CellPin.get_cell_embedding

CellPin.get_cell_embedding(dataloader, use_mean=True)

Encode cells to the latent space via the panel encoder.

Return type:

ndarray

Args:

dataloader: DataLoader over a

scAnnDataset or stAnnDataset.

use_mean: Return the posterior mean rather than a sample.

Returns:

:

Float32 array (n_cells, n_latent).